5JQM
Crystal Structure of Phosphatidic acid Transporter Ups1/Mdm35 Void of Bound Phospholipid from Saccharomyces Cerevisiae at 1.5 Angstroms Resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-11 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9791 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 118.563, 68.290, 105.137 |
Unit cell angles | 90.00, 102.10, 90.00 |
Refinement procedure
Resolution | 29.560 - 1.500 |
R-factor | 0.1656 |
Rwork | 0.164 |
R-free | 0.20240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jql |
RMSD bond length | 0.007 |
RMSD bond angle | 1.059 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8_1069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.530 |
High resolution limit [Å] | 1.500 | 4.070 | 1.500 |
Rmerge | 0.084 | 0.070 | 0.420 |
Rmeas | 0.100 | ||
Rpim | 0.052 | ||
Total number of observations | 465057 | ||
Number of reflections | 129446 | ||
<I/σ(I)> | 16.2 | ||
Completeness [%] | 98.6 | 92.4 | 88.9 |
Redundancy | 3.6 | 3.5 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 289 | 8% Tacsimate, pH5.0, 20% PEG 3350, 200mM Sodium thiocyanate |