5JGL
Crystal structure of GtmA in complex with S-Adenosylmethionine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-10-23 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.3855 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.989, 114.142, 56.438 |
Unit cell angles | 90.00, 104.55, 90.00 |
Refinement procedure
Resolution | 49.275 - 2.280 |
R-factor | 0.1933 |
Rwork | 0.192 |
R-free | 0.23360 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.621 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.275 | 49.275 | 2.410 |
High resolution limit [Å] | 2.280 | 6.770 | 2.280 |
Rmerge | 0.099 | 0.036 | 0.575 |
Number of reflections | 50076 | ||
<I/σ(I)> | 14.08 | 43.54 | 2.78 |
Completeness [%] | 98.2 | 99.1 | 92.3 |
Redundancy | 19.5 | ||
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 293 | 0.1 M sodium phosphate citrate pH 4.2, 22% (w/v) PEG 8000, 0.08% (w/v) ellipticine, 0.20% (w/v) gibbeellin A3, 0.20% (w/v) trans-cinnamic acid, 0.20% (w/v) phenol, 0.20% (w/v) succinic acid disodium salt hexahydrate and 0.02 M HEPES pH 6.8 |