5JDM
Structural mechanisms of extracellular ion exchange and induced binding-site occlusion in the sodium-calcium exchanger NCX_Mj soaked with 2.5 mM Na+ and 0.1mM Sr2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-08-01 |
Detector | MARRESEARCH |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.802, 72.267, 94.839 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.640 - 2.558 |
R-factor | 0.2341 |
Rwork | 0.231 |
R-free | 0.26430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3v5u |
RMSD bond length | 0.005 |
RMSD bond angle | 0.963 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.580 |
High resolution limit [Å] | 2.540 | 6.890 | 2.540 |
Rmerge | 0.119 | 0.045 | |
Number of reflections | 11536 | ||
<I/σ(I)> | 7.5 | ||
Completeness [%] | 99.9 | 98.2 | 100 |
Redundancy | 7.1 | 6.2 | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 293 | PEG400 |