5JCL
Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-05-14 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97954 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 78.249, 85.518, 131.263 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.800 |
R-factor | 0.1846 |
Rwork | 0.182 |
R-free | 0.23350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4h4q |
RMSD bond length | 0.018 |
RMSD bond angle | 2.048 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.830 |
High resolution limit [Å] | 1.800 | 4.880 | 1.800 |
Rmerge | 0.080 | 0.062 | 0.784 |
Rmeas | 0.083 | 0.065 | 0.816 |
Rpim | 0.023 | 0.019 | 0.222 |
Total number of observations | 1090531 | ||
Number of reflections | 82522 | ||
<I/σ(I)> | 10.3 | ||
Completeness [%] | 99.7 | 95.3 | 100 |
Redundancy | 13.2 | 11.4 | 13.4 |
CC(1/2) | 0.996 | 0.890 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | Tris, ammonium acetate, PEG 3350 |