5JC1
Structure of Plasmodium falciparum DXR in complex with a beta-substituted fosmidomycin analogue, LC55 and manganese
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-02-19 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.87260 |
Spacegroup name | P 1 |
Unit cell lengths | 51.575, 56.459, 85.708 |
Unit cell angles | 103.84, 103.25, 100.15 |
Refinement procedure
Resolution | 30.000 - 1.650 |
R-factor | 0.18068 |
Rwork | 0.179 |
R-free | 0.20379 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | LC51 pdb code: 5JAZ |
RMSD bond length | 0.008 |
RMSD bond angle | 1.234 |
Data reduction software | XDS |
Data scaling software | SCALA |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.680 | 1.740 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.090 | 0.633 |
Number of reflections | 103882 | |
<I/σ(I)> | 9 | 1.8 |
Completeness [%] | 97.4 | 95.9 |
Redundancy | 3.5 | 3.4 |
CC(1/2) | 0.997 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 10% W/V PEG 8000, 20% V/V ethylene glycol, 0.1M MES/imidazole pH6.5 0.02M each monosaccharide, (D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, N-acetyl-D-glucosamine) |