5J6C
FMN-dependent Nitroreductase (CDR20291_0767) from Clostridium difficile R20291
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-08 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.908, 70.732, 87.882 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.941 - 2.096 |
R-factor | 0.1899 |
Rwork | 0.186 |
R-free | 0.24090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3m5k |
RMSD bond length | 0.007 |
RMSD bond angle | 0.914 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.109 | 0.064 | 0.454 |
Rmeas | 0.129 | 0.078 | 0.544 |
Rpim | 0.067 | 0.043 | 0.295 |
Total number of observations | 86479 | ||
Number of reflections | 25340 | ||
<I/σ(I)> | 5.8 | ||
Completeness [%] | 99.3 | 98 | 99.4 |
Redundancy | 3.4 | 3 | 3.1 |
CC(1/2) | 0.990 | 0.814 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.2M di-hydrogen ammonium citrate 20% PEG 3350 |