5J4N
Crystal structure of the L-arginine/agmatine antiporter AdiC in complex with agmatine at 2.6 Angstroem resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-08-23 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 104.765, 175.635, 72.868 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.440 - 2.594 |
R-factor | 0.2224 |
Rwork | 0.221 |
R-free | 0.25070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5j4i |
RMSD bond length | 0.007 |
RMSD bond angle | 0.922 |
Data reduction software | XDS ((VERSION Jun 17, 2015)) |
Data scaling software | XSCALE ((VERSION Jun 17, 2015)) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.440 | 2.730 |
High resolution limit [Å] | 2.594 | 2.594 |
Rmerge | 0.011 | 1.170 |
Number of reflections | 41837 | |
<I/σ(I)> | 12 | 1.6 |
Completeness [%] | 98.7 | 94.9 |
Redundancy | 6.7 | 6.7 |
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | PEG 400; NaCl |