5IQF
Aminoglycoside Phosphotransferase (2'')-Ia (CTD of APH(6')-Ie/APH(2'')-Ia) in complex with GDP and Magnesium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-01-10 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 90.454, 99.075, 92.350 |
Unit cell angles | 90.00, 105.18, 90.00 |
Refinement procedure
Resolution | 89.130 - 2.350 |
R-factor | 0.18244 |
Rwork | 0.180 |
R-free | 0.22783 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5byl |
RMSD bond length | 0.013 |
RMSD bond angle | 1.537 |
Data reduction software | iMOSFLM (0.1.27) |
Data scaling software | Aimless (0.3.11) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 89.130 | 2.410 |
High resolution limit [Å] | 2.350 | 2.350 |
Rmerge | 0.139 | 1.211 |
Number of reflections | 65601 | |
<I/σ(I)> | 10.9 | 1.7 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.2 | 6.9 |
CC(1/2) | 0.997 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 296 | 80-120mM MgCl2, 8% glycerol, 10% PEG 3350, 100mM HEPES pH 7.5 |