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5IPD

Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) nucleoside thiophosphoramidate covalent intermediate complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2015-04-18
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.000
Spacegroup nameC 1 2 1
Unit cell lengths78.445, 46.241, 64.218
Unit cell angles90.00, 94.78, 90.00
Refinement procedure
Resolution39.800 - 1.750
R-factor0.159
Rwork0.158
R-free0.18800
RMSD bond length0.006
RMSD bond angle0.935
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.9951.760
High resolution limit [Å]1.7501.750
Rmerge0.0630.353
Number of reflections22992
<I/σ(I)>14.4
Completeness [%]98.697.3
Redundancy3.23.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION6.4293100 mM MES, 34% PEG 8000

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PDB entries from 2025-06-18

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