5IP3
Tomato spotted wilt tospovirus nucleocapsid protein-ssDNA complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-01-25 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 68.940, 86.457, 66.322 |
Unit cell angles | 90.00, 112.10, 90.00 |
Refinement procedure
Resolution | 37.753 - 3.000 |
R-factor | 0.2534 |
Rwork | 0.251 |
R-free | 0.29130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4YBW |
RMSD bond length | 0.005 |
RMSD bond angle | 0.938 |
Refinement software | PHENIX (dev_1426) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.000 | 47.035 | 3.180 |
High resolution limit [Å] | 3.000 | 8.850 | 3.000 |
Rmerge | 0.074 | 0.038 | 0.928 |
Rmeas | 0.080 | 0.041 | 0.996 |
Total number of observations | 110284 | ||
Number of reflections | 14540 | 591 | 2273 |
<I/σ(I)> | 17.11 | 45.1 | 2.38 |
Completeness [%] | 99.4 | 97.8 | 98 |
Redundancy | 7.58 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | 0.1 M HEPES pH7.5, 25% (w/v) PEG1000 |