5IKZ
Glycerol bound structure of Obc1, a bifunctional enzyme for quorum sensing-dependent oxalogenesis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-12 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.9793 |
Spacegroup name | H 3 2 |
Unit cell lengths | 229.970, 229.970, 253.763 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.349 - 2.800 |
R-factor | 0.2 |
Rwork | 0.199 |
R-free | 0.22740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5iky |
RMSD bond length | 0.003 |
RMSD bond angle | 0.690 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.5.12) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.340 | 78.340 | 2.870 |
High resolution limit [Å] | 2.800 | 12.830 | 2.800 |
Rmerge | 0.277 | 0.070 | 2.647 |
Number of reflections | 63296 | ||
<I/σ(I)> | 12.4 | ||
Completeness [%] | 100.0 | 98.2 | 100 |
Redundancy | 19.6 | 18.5 | 17.5 |
CC(1/2) | 0.996 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | 0.1M HEPES pH 7.0, 1M Sodium citrate tribasic |