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5IJQ

Crystal structure of autotaxin (ENPP2) re-refined

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyCCD
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.283
Spacegroup nameP 1
Unit cell lengths53.808, 63.289, 70.471
Unit cell angles98.78, 106.22, 99.77
Refinement procedure
Resolution20.000 - 2.050
R-factor0.1562
Rwork0.154
R-free0.19740
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2gsn
RMSD bond length0.008
RMSD bond angle1.360
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (refmac_5.8.0131)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.120
High resolution limit [Å]2.0502.050
Rmerge0.1000.380
Number of reflections52153
<I/σ(I)>13.92.49
Completeness [%]96.893.9
Redundancy4.83
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8293Protein buffer: 3.5-5.0 mg/ml autotaxin in 50 mM Tris pH 8.0 and 150 mM NaCl Crystallization condition: 20% PEG 3350, 0.2 M ammonium iodide, 0.3 M sodium thiocyanate

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PDB entries from 2024-07-17

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