5II3
The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and compound 3, a platin(II) compound containing a O, S bidentate ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | ENRAF-NONIUS FR571 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-01 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 78.206, 78.206, 37.005 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 55.300 - 1.780 |
R-factor | 0.15542 |
Rwork | 0.153 |
R-free | 0.19011 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4j1a |
RMSD bond length | 0.020 |
RMSD bond angle | 1.990 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.300 | 1.810 |
High resolution limit [Å] | 1.780 | 1.780 |
Rmerge | 0.052 | 0.231 |
Number of reflections | 11254 | |
<I/σ(I)> | 49.1 | 3.8 |
Completeness [%] | 97.6 | 81.4 |
Redundancy | 7.1 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.4 | 298 | Crystals of hen egg white lysozyme-Pt compound adducts appeared in solutions consisting of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4. Single crystals suitable for X-ray experiments were grown by the hanging drop vapor diffusion method using a 1:1 ratio of reservoir solution and protein adducts solution with a protein concentration of about 15 mg /ml. |