Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IHD

Calcium(II) and copper(II) bound to the Z-DNA form of d(CGCGCG), complexed by L-lactate and succinate

Replaces:  4XQY
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSEALED TUBE
Source detailsLong fine focus
Temperature [K]183
Detector technologyIMAGE PLATE
Collection date2005-11-07
DetectorSTOE
Wavelength(s)1.54
Spacegroup nameP 1 21 1
Unit cell lengths27.487, 35.576, 31.044
Unit cell angles90.00, 107.50, 90.00
Refinement procedure
Resolution26.215 - 1.570
R-factor0.162
Rwork0.161
R-free0.19000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2dcg
RMSD bond length0.007
RMSD bond angle1.048
Data reduction softwareX-Area
Data scaling softwareXSCALE
Phasing softwareSHELXS
Refinement softwarePHENIX (dev_1834)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]26.2151.700
High resolution limit [Å]1.5701.570
Rmerge0.0690.174
Number of reflections7934
<I/σ(I)>16.513.77
Completeness [%]97.989
Redundancy6.82.96
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH62961.2 mM d(CG)3, 1.2 mM di copper complex, 0.25 M MES pH 6, 25 mM Ca(lactate)2, 2.5% EtOAc

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon