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5IGA

Crystal structure of a marine metagenome TRAP solute binding protein specific for aromatic acid ligands (Sorcerer II Global Ocean Sampling Expedition, unidentified microbe, locus tag GOS_1523157, Triple Surface Mutant K158A_K223A_K313A) in complex with co-purified parahydroxybenzoate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2016-02-15
DetectorDECTRIS PILATUS 200K
Wavelength(s)1.54056
Spacegroup nameP 1 21 1
Unit cell lengths39.830, 84.470, 46.069
Unit cell angles90.00, 113.22, 90.00
Refinement procedure
Resolution42.338 - 1.450
R-factor0.1208
Rwork0.120
R-free0.14290
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5i5p
RMSD bond length0.008
RMSD bond angle1.050
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareMOLREP
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]100.000100.0001.480
High resolution limit [Å]1.4503.9401.450
Rmerge0.1120.0860.165
Rmeas0.1260.0960.217
Rpim0.0550.0420.139
Total number of observations164361
Number of reflections49010
<I/σ(I)>20.4
Completeness [%]98.399.992.6
Redundancy3.452
CC(1/2)0.9860.934
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5298Protein (10 mM HEPES pH 7.5, 5 mM DTT, 10 mM 3-(3-hydroxyphenyl)propionic acid); Reservoir (MCSG2 (H4) 0.2 M Ammonium Acetate, 0.1 M Tris pH 8.5 25 %(w/v) PEG 3350); Cryoprotection (20% diethylene glycol, 80% reservoir)

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PDB entries from 2024-10-16

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