5IGA
Crystal structure of a marine metagenome TRAP solute binding protein specific for aromatic acid ligands (Sorcerer II Global Ocean Sampling Expedition, unidentified microbe, locus tag GOS_1523157, Triple Surface Mutant K158A_K223A_K313A) in complex with co-purified parahydroxybenzoate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-15 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54056 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.830, 84.470, 46.069 |
Unit cell angles | 90.00, 113.22, 90.00 |
Refinement procedure
Resolution | 42.338 - 1.450 |
R-factor | 0.1208 |
Rwork | 0.120 |
R-free | 0.14290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5i5p |
RMSD bond length | 0.008 |
RMSD bond angle | 1.050 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 100.000 | 1.480 |
High resolution limit [Å] | 1.450 | 3.940 | 1.450 |
Rmerge | 0.112 | 0.086 | 0.165 |
Rmeas | 0.126 | 0.096 | 0.217 |
Rpim | 0.055 | 0.042 | 0.139 |
Total number of observations | 164361 | ||
Number of reflections | 49010 | ||
<I/σ(I)> | 20.4 | ||
Completeness [%] | 98.3 | 99.9 | 92.6 |
Redundancy | 3.4 | 5 | 2 |
CC(1/2) | 0.986 | 0.934 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Protein (10 mM HEPES pH 7.5, 5 mM DTT, 10 mM 3-(3-hydroxyphenyl)propionic acid); Reservoir (MCSG2 (H4) 0.2 M Ammonium Acetate, 0.1 M Tris pH 8.5 25 %(w/v) PEG 3350); Cryoprotection (20% diethylene glycol, 80% reservoir) |