5IDX
Crystal structure of an oxidoreductase from Burkholderia vietnamiensis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-03 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 110.750, 110.750, 110.050 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.165 - 1.950 |
R-factor | 0.1619 |
Rwork | 0.161 |
R-free | 0.19870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1o5i |
RMSD bond length | 0.006 |
RMSD bond angle | 0.713 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (dev_2313) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 2.000 | ||
High resolution limit [Å] | 1.950 | 8.720 | 1.950 |
Rmerge | 0.074 | 0.025 | 0.569 |
Rmeas | 0.078 | 0.026 | 0.597 |
Total number of observations | 522083 | ||
Number of reflections | 50463 | 658 | 3678 |
<I/σ(I)> | 23.21 | 52.48 | 4.6 |
Completeness [%] | 100.0 | 97.3 | 100 |
CC(1/2) | 0.999 | 1.000 | 0.931 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 290 | MCSG1 C8 (269601c8): 200mM Ammonium sulfate, 100mM Sodium citrate-HCl pH5.6, 25% PEG4000, 4mM NAD; protein conc. 21.43mg/mL; 20% eg cryo; puck dom8-6 |