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5IDX

Crystal structure of an oxidoreductase from Burkholderia vietnamiensis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2016-02-03
DetectorRAYONIX MX-225
Wavelength(s)0.97872
Spacegroup nameP 43 21 2
Unit cell lengths110.750, 110.750, 110.050
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.165 - 1.950
R-factor0.1619
Rwork0.161
R-free0.19870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1o5i
RMSD bond length0.006
RMSD bond angle0.713
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (dev_2313)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]2.000
High resolution limit [Å]1.9508.7201.950
Rmerge0.0740.0250.569
Rmeas0.0780.0260.597
Total number of observations522083
Number of reflections504636583678
<I/σ(I)>23.2152.484.6
Completeness [%]100.097.3100
CC(1/2)0.9991.0000.931
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP290MCSG1 C8 (269601c8): 200mM Ammonium sulfate, 100mM Sodium citrate-HCl pH5.6, 25% PEG4000, 4mM NAD; protein conc. 21.43mg/mL; 20% eg cryo; puck dom8-6

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