5IBO
1.95A resolution structure of NanoLuc luciferase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-02-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 60.436, 62.658, 96.835 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.417 - 1.950 |
R-factor | 0.1913 |
Rwork | 0.188 |
R-free | 0.24990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | In-house Selenomethionine Structure |
RMSD bond length | 0.012 |
RMSD bond angle | 1.098 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.29) |
Phasing software | PHASER (2.5.4) |
Refinement software | PHENIX ((dev_2356: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.420 | 48.420 | 2.000 |
High resolution limit [Å] | 1.950 | 8.940 | 1.950 |
Rmerge | 0.079 | 0.020 | 0.856 |
Rmeas | 0.086 | ||
Rpim | 0.034 | ||
Total number of observations | 171068 | ||
Number of reflections | 27490 | ||
<I/σ(I)> | 17.4 | ||
Completeness [%] | 99.9 | 99.2 | 100 |
Redundancy | 6.2 | 5.6 | 6.1 |
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% (w/v) PEG 3350, 200 mM ammonium nitrate |