Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IBK

Skp1-F-box in complex with a ubiquitin variant

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2013-08-07
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.97950
Spacegroup nameP 21 21 21
Unit cell lengths63.368, 98.015, 107.704
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.709 - 2.503
R-factor0.2016
Rwork0.200
R-free0.23990
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ovr 1ubq
RMSD bond length0.004
RMSD bond angle0.879
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Refinement softwarePHENIX (1.8.2_1309)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.70950.0002.560
High resolution limit [Å]2.5006.1602.500
Rmerge0.0460.0210.657
Rmeas0.052
Rpim0.024
Total number of observations103319
Number of reflections23666
<I/σ(I)>5.6
Completeness [%]99.498.899.1
Redundancy4.44.23.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.5293100 mM Acetate pH 4.5, 12% PEG 4000, 15% glyerol

239149

PDB entries from 2025-07-23

PDB statisticsPDBj update infoContact PDBjnumon