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5I9J

Structure of the cholesterol and lutein-binding domain of human STARD3 at 1.74A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 12.3.1
Synchrotron siteALS
Beamline12.3.1
Temperature [K]100
Detector technologyCCD
Collection date2015-09-19
DetectorADSC QUANTUM 315r
Wavelength(s)1.11583
Spacegroup nameP 31 2 1
Unit cell lengths83.390, 83.390, 82.190
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution37.180 - 1.740
R-factor0.17
Rwork0.169
R-free0.19190
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1em2
RMSD bond length0.013
RMSD bond angle1.161
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (dev-2276)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.1801.790
High resolution limit [Å]1.7401.740
Rmerge0.0460.810
Number of reflections34160
<I/σ(I)>25.82.4
Completeness [%]99.598.6
Redundancy8.86.8
CC(1/2)0.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.12950.85 M sodium/potassium tartrate, 0.2 M lithium sulfate, 0.1 M CHES, 0.01 M dithiothreitol. Cryostabilizer: 18% ethylene glycol, 5% ethanol in addition to 0.8M sodium/potassium tartrate, 0.1 M CHES pH 9.1, 0.2 M lithium sulfate, 0.01 M dithiothreitol. Crystals were frozen in propane and stored under liquid nitrogen

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PDB entries from 2024-07-17

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