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5I5L

The photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form, chromophore modelled with an endocyclic double bond in pyrrole ring A

Replaces:  4WKK
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-4
Synchrotron siteESRF
BeamlineID14-4
Temperature [K]100
Detector technologyCCD
Collection date2010-07-10
DetectorADSC QUANTUM 315r
Wavelength(s)0.9395
Spacegroup nameI 4 2 2
Unit cell lengths173.019, 173.019, 78.823
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.550 - 2.700
R-factor0.2187
Rwork0.216
R-free0.27901
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5hsq
RMSD bond length0.009
RMSD bond angle1.447
Data reduction softwareXDS
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0155)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.5502.850
High resolution limit [Å]2.7002.700
Rmerge0.0610.640
Number of reflections16105
<I/σ(I)>203.3
Completeness [%]96.787.7
Redundancy7.36.1
CC(1/2)0.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP829816% PEG3350, 0.2 M CaCl2, 0.1 M Tris/HCl

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PDB entries from 2024-07-10

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