5I5L
The photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form, chromophore modelled with an endocyclic double bond in pyrrole ring A
Replaces: 4WKKExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-4 |
Synchrotron site | ESRF |
Beamline | ID14-4 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-07-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9395 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 173.019, 173.019, 78.823 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.550 - 2.700 |
R-factor | 0.2187 |
Rwork | 0.216 |
R-free | 0.27901 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5hsq |
RMSD bond length | 0.009 |
RMSD bond angle | 1.447 |
Data reduction software | XDS |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.550 | 2.850 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.061 | 0.640 |
Number of reflections | 16105 | |
<I/σ(I)> | 20 | 3.3 |
Completeness [%] | 96.7 | 87.7 |
Redundancy | 7.3 | 6.1 |
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | 16% PEG3350, 0.2 M CaCl2, 0.1 M Tris/HCl |