5I47
Crystal structure of RimK domain protein ATP-grasp from Sphaerobacter thermophilus DSM 20745
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-03-05 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.641, 64.819, 160.075 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.196 - 2.350 |
R-factor | 0.2028 |
Rwork | 0.201 |
R-free | 0.23860 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.531 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | HKL-3000 |
Refinement software | PHENIX ((1.10_2155)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.390 |
High resolution limit [Å] | 2.350 | 6.370 | 2.350 |
Rmerge | 0.071 | 0.036 | 0.715 |
Rmeas | 0.077 | 0.040 | 0.779 |
Rpim | 0.029 | 0.016 | 0.305 |
Total number of observations | 191899 | ||
Number of reflections | 27874 | ||
<I/σ(I)> | 9.1 | ||
Completeness [%] | 99.6 | 99.5 | 96.4 |
Redundancy | 6.9 | 6.2 | 6 |
CC(1/2) | 0.996 | 0.830 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 297 | Ammonium sulfate, Bis-Tris |