5I3E
Crystal structure of putative Putative deoxyribonuclease-2 from Burkholderia thailandensis, E264
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-09-25 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.999995 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.160, 61.750, 102.600 |
Unit cell angles | 90.00, 92.12, 90.00 |
Refinement procedure
Resolution | 39.443 - 1.650 |
R-factor | 0.1557 |
Rwork | 0.154 |
R-free | 0.18660 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 0.886 |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.690 | |
High resolution limit [Å] | 1.650 | 7.380 | 1.650 |
Rmerge | 0.052 | 0.014 | 0.523 |
Number of reflections | 76021 | ||
<I/σ(I)> | 16.74 | 53.41 | 2.12 |
Completeness [%] | 98.7 | 93.4 | 99.5 |
Redundancy | 2.5 | 2.5 | |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | MCSG1 screen, b12: 100mM BisTris pH 6.5, 28% PEG MME 2000, trays set up at 26.5mg/ml, cryo: 15% EG; for phasing a crystal from 25% PEG 3350, 100mM BisTris pH 6.0 was incubated for 30s in a buffer containing 15% EG and 750mM NaI, iodide data were collected at the in-house source; ButhA.18065.a.B1.PS18111 at 26.5 mg/ml |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | MCSG1 screen, b12: 100mM BisTris pH 6.5, 28% PEG MME 2000, trays set up at 26.5mg/ml, cryo: 15% EG; for phasing a crystal from 25% PEG 3350, 100mM BisTris pH 6.0 was incubated for 30s in a buffer containing 15% EG and 750mM NaI, iodide data were collected at the in-house source; ButhA.18065.a.B1.PS18111 at 26.5 mg/ml |