5HQ1
Comment on S. W. M. Tanley and J. R. Helliwell Structural dynamics of cisplatin binding to histidine in a protein Struct. Dyn. 1, 034701 (2014) regarding the refinement of 4mwk, 4mwm, 4mwn and 4oxe and the method we have adopted.
Replaces: 4MWMExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER AXS MICROSTAR |
Temperature [K] | 200 |
Detector technology | CCD |
Collection date | 2012-11-03 |
Detector | APEX II CCD |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 26.777, 31.382, 33.865 |
Unit cell angles | 88.90, 72.31, 68.46 |
Refinement procedure
Resolution | 32.090 - 1.000 |
R-factor | 0.17317 |
Rwork | 0.172 |
R-free | 0.19699 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4mwm |
RMSD bond length | 0.023 |
RMSD bond angle | 1.908 |
Data reduction software | SAINT |
Data scaling software | APEX |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.090 | 1.100 |
High resolution limit [Å] | 1.000 | 1.000 |
Rmerge | 0.087 | 0.241 |
Number of reflections | 47695 | |
<I/σ(I)> | 5.93 | 1.33 |
Completeness [%] | 90.8 | 79.7 |
Redundancy | 2.25 | 0.81 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 4.7 | 294 | CRYSTALLIZATION CONDITIONS: 40MG HEWL CO-CRYSTALLISED WITH 2.6MG CISPLATIN, WITH THE PLATINUM COMPOUNDS BEING IN A 3-FOLD MOLAR EXCESS TO THE PROTEIN. 462.5 UL OF A 0.02M NAAC SOLUTION ALONG WITH 462.5 UL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 UL DMSO ADDED, BATCH, TEMPERATURE 294K, PH 4.7, EVAPORATION. |