5HGB
HLA*A2402 complexed with HIV nef138 8mer epitope
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2011-05-10 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.954, 152.515, 90.172 |
Unit cell angles | 90.00, 90.12, 90.00 |
Refinement procedure
Resolution | 35.977 - 2.400 |
R-factor | 0.1962 |
Rwork | 0.195 |
R-free | 0.21850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bck |
RMSD bond length | 0.004 |
RMSD bond angle | 0.807 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.5_2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.554 | |
Number of reflections | 75193 | |
<I/σ(I)> | 13.024 | 2.219 |
Completeness [%] | 99.3 | 99.3 |
Redundancy | 3.1 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.5 | 291 | 0.1 M MES monohydrate pH 6.5, 12% w/v Polyethylene glycol 20000 |