5HC6
Crystal structure of lavandulyl diphosphate synthase from Lavandula x intermedia in apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13C1 |
Synchrotron site | NSRRC |
Beamline | BL13C1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-09-24 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 54.357, 142.085, 78.666 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.000 - 2.150 |
R-factor | 0.1819 |
Rwork | 0.179 |
R-free | 0.23410 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 |
RMSD bond angle | 1.825 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.230 |
High resolution limit [Å] | 2.150 | 4.620 | 2.150 |
Rmerge | 0.054 | 0.028 | 0.418 |
Rmeas | 0.064 | 0.033 | 0.490 |
Rpim | 0.033 | 0.017 | 0.250 |
Total number of observations | 58377 | ||
Number of reflections | 16659 | ||
<I/σ(I)> | 11.3 | ||
Completeness [%] | 98.0 | 94.9 | 93.5 |
Redundancy | 3.5 | 3.5 | 3.4 |
CC(1/2) | 0.999 | 0.855 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | Ammonium Sulfate, Glycerol, PEG400 |