5H7Q
Crystal structure of human MNDA PYD domain with MBP tag
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-01-25 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 42.040, 68.810, 174.460 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.870 - 1.451 |
R-factor | 0.2078 |
Rwork | 0.207 |
R-free | 0.22480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ifp |
RMSD bond length | 0.005 |
RMSD bond angle | 0.792 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_2481: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.540 |
High resolution limit [Å] | 1.450 | 1.450 |
Number of reflections | 89636 | |
<I/σ(I)> | 23.1 | 2.1 |
Completeness [%] | 98.9 | 95.7 |
Redundancy | 5.9 | 4.1 |
CC(1/2) | 0.999 | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | 20% PEG 4000, 0.1M Tris-HCl pH8.0 |