5H70
Crystal structure of ADP bound dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
Replaces: 4RZUExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B2 |
Synchrotron site | SPring-8 |
Beamline | BL26B2 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2008-11-06 |
Detector | RIGAKU RAXIS V |
Wavelength(s) | 0.9000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.171, 63.799, 141.758 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.456 - 2.400 |
R-factor | 0.2361 |
Rwork | 0.233 |
R-free | 0.29990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2plr |
RMSD bond length | 0.009 |
RMSD bond angle | 1.191 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.046 | 0.385 |
Number of reflections | 18674 | |
<I/σ(I)> | 57.9 | 8.05 |
Completeness [%] | 99.8 | 99.9 |
Redundancy | 6.4 | 5.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 50% PEG 200, 100mM Hepes, pH 7.5, VAPOR DIFFUSION, ADP |