5H2F
Crystal structure of the PsbM-deletion mutant of photosystem II
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL38B1 |
Synchrotron site | SPring-8 |
Beamline | BL38B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-12-13 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.8 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 121.954, 226.993, 285.886 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.200 |
R-factor | 0.177 |
Rwork | 0.174 |
R-free | 0.22600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wu2 |
RMSD bond length | 0.016 |
RMSD bond angle | 2.335 |
Data reduction software | XSCALE |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.6.0117) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 46.794 | 2.320 |
High resolution limit [Å] | 2.200 | 6.960 | 2.200 |
Rmerge | 0.029 | 0.705 | |
Rmeas | 0.092 | 0.032 | 0.788 |
Rpim | 0.039 | 0.014 | 0.344 |
Total number of observations | 2003997 | 62052 | 272075 |
Number of reflections | 385629 | ||
<I/σ(I)> | 13.6 | 48.7 | 2.2 |
Completeness [%] | 96.7 | 91.8 | 96.6 |
Redundancy | 5.2 | 5.1 | 4.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.1 | 285 | PEG1450, sodium chloride, calcium chloride, magnesium sulfate |