5H04
Crystal structure of an ADP-ribosylating toxin BECa of a novel binary enterotoxin of C. perfringens with NADH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-01-28 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.0000 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 70.337, 102.815, 125.033 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.651 - 1.825 |
R-factor | 0.1808 |
Rwork | 0.179 |
R-free | 0.21770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5h03 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.827 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.850 |
High resolution limit [Å] | 1.820 | 4.940 | 1.820 |
Rmerge | 0.073 | 0.048 | 0.377 |
Number of reflections | 40199 | ||
<I/σ(I)> | 19.6 | ||
Completeness [%] | 99.8 | 98.2 | 100 |
Redundancy | 7 | 6.8 | 7.3 |
CC(1/2) | 0.996 | 0.967 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.8 | 293 | 100 mM Tris-HCl, 450 mM Magunesium chloride, 23% PEG 4000 |