5GVP
Plasmodium vivax SHMT bound with PLP-glycine and GS654
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13B1 |
Synchrotron site | NSRRC |
Beamline | BL13B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-03-25 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 102.075, 58.928, 234.830 |
Unit cell angles | 90.00, 90.06, 90.00 |
Refinement procedure
Resolution | 50.010 - 2.260 |
R-factor | 0.2563 |
Rwork | 0.250 |
R-free | 0.31150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tmr |
RMSD bond length | 0.011 |
RMSD bond angle | 1.544 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.010 | 50.000 | 2.340 |
High resolution limit [Å] | 2.260 | 4.870 | 2.260 |
Rmerge | 0.020 | 0.015 | 0.126 |
Number of reflections | 63448 | ||
<I/σ(I)> | 32.4 | ||
Completeness [%] | 96.3 | 96.9 | 81.8 |
Redundancy | 3.7 | 3.6 | 2.9 |
CC(1/2) | 0.999 | 0.982 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 8.5 | 298 | PEG 4000, 0.06-0.12 M NaCl, 0.1 M Tris-HCl pH 8.5 |