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5GVE

Human TOP3B-TDRD3 complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]100
Detector technologyCMOS
Collection date2015-05-16
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1.0
Spacegroup nameP 65
Unit cell lengths173.563, 173.563, 111.810
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution46.997 - 3.606
R-factor0.2004
Rwork0.198
R-free0.24520
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5gvc 5gvd
RMSD bond length0.004
RMSD bond angle1.135
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.660
High resolution limit [Å]3.6003.600
Number of reflections22224
<I/σ(I)>11.2
Completeness [%]99.9
Redundancy9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.229350 mM Na-cacodylate, 10 mM MgSO4, 1.7 M Li2SO4

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PDB entries from 2026-01-21

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