5GJH
Gads SH2 domain/CD28-derived peptide complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-11-26 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.7000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 33.602, 53.338, 108.302 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.850 - 1.200 |
R-factor | 0.1494 |
Rwork | 0.148 |
R-free | 0.16950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1r1q |
RMSD bond length | 0.013 |
RMSD bond angle | 1.591 |
Data reduction software | XDS (March 1, 2015) |
Data scaling software | XDS (March 1, 2015) |
Phasing software | PHASER (2.5.1) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.270 |
High resolution limit [Å] | 1.200 | 1.200 |
Rmerge | 0.059 | 0.389 |
Number of reflections | 61484 | |
<I/σ(I)> | 14.5 | 3.7 |
Completeness [%] | 99.3 | 99.3 |
Redundancy | 6.6 | 6.7 |
CC(1/2) | 0.999 | 0.960 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 100 mM HEPES-NaOH, 10% PEG 6000, 20% MPD |