5GGG
Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase form I
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-01-31 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1.0000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 99.917, 99.917, 236.104 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.684 - 3.000 |
R-factor | 0.2072 |
Rwork | 0.205 |
R-free | 0.24120 |
Structure solution method | SAD |
RMSD bond length | 0.005 |
RMSD bond angle | 0.947 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | autoSHARP |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.684 | 3.180 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.067 | 0.657 |
Number of reflections | 45699 | |
<I/σ(I)> | 30.8 | 4.6 |
Completeness [%] | 99.9 | 100 |
Redundancy | 14.2 | 14.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | Na malonate |