Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5FYA

Cubic crystal of the native PlpD

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2013-12-08
DetectorDECTRIS PILATUS 6M
Spacegroup nameP 21 3
Unit cell lengths145.906, 145.906, 145.906
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.635 - 2.141
R-factor0.2013
Rwork0.199
R-free0.22690
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5fqu
RMSD bond length0.004
RMSD bond angle0.787
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.6402.270
High resolution limit [Å]2.1402.140
Number of reflections54378
<I/σ(I)>61.63
Completeness [%]95.385.4
Redundancy5.95.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
11.4 M MAGNESIUM SULFATE, 0.1M BIS-TRIS PROPANE PH 7.0

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon