5FKB
Structure of D80A-fructofuranosidase from Xanthophyllomyces dendrorhous complexed with 1-Kestose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-01-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9786 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 74.526, 205.019, 145.988 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 118.920 - 1.780 |
R-factor | 0.17109 |
Rwork | 0.170 |
R-free | 0.18414 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ann |
RMSD bond length | 0.007 |
RMSD bond angle | 1.402 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 118.920 | 1.810 |
High resolution limit [Å] | 1.780 | 1.780 |
Rmerge | 0.060 | 0.530 |
Number of reflections | 213888 | |
<I/σ(I)> | 19.5 | 3.3 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 6.7 | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 8.5 | PROTEIN WAS CRYSTALLIZED FROM 1.2M SODIUM CITRATE TRIBASIC DIHYDRATE, 0.1M TRIS-HCL PH 8.5, THEN SOAKED IN 30MM 1-KESTOSE |