5FEC
Crystal structure of 3BNC60 Fab germline precursor in complex with 426c.TM4deltaV1-3 gp120
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL12-2 |
| Synchrotron site | SSRL |
| Beamline | BL12-2 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-06-06 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 1.033 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 103.070, 134.103, 194.955 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 39.424 - 3.170 |
| R-factor | 0.2036 |
| Rwork | 0.202 |
| R-free | 0.26640 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5f7e 5fa2 |
| RMSD bond length | 0.018 |
| RMSD bond angle | 1.523 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.1.26) |
| Phasing software | PHASER |
| Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 39.424 | 45.850 | 3.390 |
| High resolution limit [Å] | 3.170 | 8.960 | 3.170 |
| Rmerge | 0.560 | 0.481 | 0.934 |
| Rmeas | 0.614 | 0.529 | 1.037 |
| Rpim | 0.249 | 0.215 | 0.441 |
| Total number of observations | 123364 | 5589 | 17116 |
| Number of reflections | 46508 | ||
| <I/σ(I)> | 2.4 | 3.4 | 1.4 |
| Completeness [%] | 97.7 | 99 | 87.6 |
| Redundancy | 5.8 | 5.4 | 5 |
| CC(1/2) | 0.730 | 0.739 | 0.350 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.1 M Imidazole pH 7.0, 8% PEG 10,000, 10 mM calcium chloride dihydrate |
