5FDW
Structure of HLA-A2:01 with peptide Y10L
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 12.3.1 |
Synchrotron site | ALS |
Beamline | 12.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-09-17 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.73, 2.5 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 56.384, 79.492, 57.208 |
Unit cell angles | 90.00, 116.09, 90.00 |
Refinement procedure
Resolution | 48.180 - 2.700 |
R-factor | 0.21662 |
Rwork | 0.213 |
R-free | 0.28505 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mre |
RMSD bond length | 0.011 |
RMSD bond angle | 1.457 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0124) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.800 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.190 | 0.660 |
Number of reflections | 11732 | |
<I/σ(I)> | 7.89 | 2.1 |
Completeness [%] | 93.3 | 95.4 |
Redundancy | 2.8 | 2.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 30% PEG 4000, 0.1M Tris-HCl pH 8.0, 0.2M lithium sulfate |