5FDB
Iron free rat cysteine dioxygenase R60QC164R variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2015-06-26 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.953700 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 57.190, 57.190, 123.080 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.796 - 1.750 |
R-factor | 0.1903 |
Rwork | 0.189 |
R-free | 0.21720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kwj |
RMSD bond length | 0.007 |
RMSD bond angle | 0.793 |
Data reduction software | MOSFLM (7.1.0) |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 57.190 | 57.190 | 1.790 |
High resolution limit [Å] | 1.750 | 8.750 | 1.750 |
Rmerge | 0.099 | 0.047 | 0.465 |
Rpim | 0.030 | 0.016 | 0.202 |
Total number of observations | 244273 | 1991 | 7659 |
Number of reflections | 21417 | ||
<I/σ(I)> | 14.5 | 24.1 | 2.2 |
Completeness [%] | 99.9 | 96.2 | 99.3 |
Redundancy | 11.4 | 9 | 6.2 |
CC(1/2) | 0.998 | 0.998 | 0.899 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 291 | Hanging drops of 1 uL of 31.7 mg/mL R60QC164R CDO which had been iron reconstituted to 57% occupancy [100mM Tris-HCl, 50mM NaCl pH 8.0] and 2 uL of reservoir buffer containing crushed WT CDO seeds were allowed to equilibrate above the reservoir buffer [26% (w/v) polyethylene glycol 4000, 200 mM ammonium acetate, and 100 mM sodium citrate (pH 6.2)]. |