5FB1
Crystal Structure of a PHD finger bound to histone H3 K9me3 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-05-31 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 52.840, 102.964, 44.955 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.240 - 2.100 |
R-factor | 0.1692 |
Rwork | 0.167 |
R-free | 0.21980 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.817 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | AutoSol |
Refinement software | PHENIX (1.10_2155: ???) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.116 | 0.038 | 0.665 |
Rmeas | 0.125 | 0.042 | 0.717 |
Rpim | 0.047 | 0.016 | 0.265 |
Total number of observations | 105585 | ||
Number of reflections | 14943 | ||
<I/σ(I)> | 7.4 | ||
Completeness [%] | 99.9 | 99.3 | 100 |
Redundancy | 7.1 | 6.5 | 7.2 |
CC(1/2) | 0.999 | 0.899 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 0.1 M sodium citrate/citric acid, pH 5.5, 10% 2-propanol |