5FAI
EMG1 N1-Specific Pseudouridine Methyltransferase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-07-10 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97921 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 86.118, 86.118, 125.178 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.000 - 1.800 |
R-factor | 0.1684 |
Rwork | 0.168 |
R-free | 0.18330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2v3k |
RMSD bond length | 0.011 |
RMSD bond angle | 1.410 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.5.7) |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.830 |
High resolution limit [Å] | 1.800 | 4.880 | 1.800 |
Rmerge | 0.093 | 0.031 | 0.912 |
Rmeas | 0.101 | 0.034 | 0.982 |
Rpim | 0.038 | 0.013 | 0.363 |
Total number of observations | 181554 | ||
Number of reflections | 26058 | ||
<I/σ(I)> | 8.4 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 7 | 6.3 | 7.1 |
CC(1/2) | 0.999 | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 20% PEG 3350, 0.2 M di-NH4 Citrate |