5F4J
Protruding domain of GII.17 norovirus Saitama/T87
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-10-13 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.87260 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 73.300, 100.750, 83.370 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.308 - 1.933 |
R-factor | 0.1678 |
Rwork | 0.166 |
R-free | 0.19750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5F4M chain A |
RMSD bond length | 0.006 |
RMSD bond angle | 0.991 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.310 | 1.980 | |
High resolution limit [Å] | 1.930 | 8.640 | 1.930 |
Rmerge | 0.095 | 0.034 | 0.808 |
Rmeas | 0.108 | 0.039 | 0.912 |
Total number of observations | 106349 | ||
Number of reflections | 23291 | 294 | 1652 |
<I/σ(I)> | 11.32 | 33.48 | 1.96 |
Completeness [%] | 99.2 | 95.1 | 95.9 |
Redundancy | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | Magnesium Chloride, PEG8000, Tris-HCl |