Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5F4J

Protruding domain of GII.17 norovirus Saitama/T87

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyPIXEL
Collection date2015-10-13
DetectorDECTRIS PILATUS3 2M
Wavelength(s)0.87260
Spacegroup nameC 2 2 21
Unit cell lengths73.300, 100.750, 83.370
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.308 - 1.933
R-factor0.1678
Rwork0.166
R-free0.19750
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5F4M chain A
RMSD bond length0.006
RMSD bond angle0.991
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.3101.980
High resolution limit [Å]1.9308.6401.930
Rmerge0.0950.0340.808
Rmeas0.1080.0390.912
Total number of observations106349
Number of reflections232912941652
<I/σ(I)>11.3233.481.96
Completeness [%]99.295.195.9
Redundancy4.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.5291Magnesium Chloride, PEG8000, Tris-HCl

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon