Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5F2V

Crystal structure of the small alarmone synthethase 1 from Bacillus subtilis bound to AMPCPP

Replaces:  5DEE
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2014-03-06
DetectorPSI PILATUS 6M
Wavelength(s)0.97934
Spacegroup nameP 1 21 1
Unit cell lengths116.671, 103.631, 138.290
Unit cell angles90.00, 104.84, 90.00
Refinement procedure
Resolution48.310 - 2.800
R-factor0.1943
Rwork0.193
R-free0.26370
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5dec
RMSD bond length0.009
RMSD bond angle1.172
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1685)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.3102.950
High resolution limit [Å]2.8002.800
Rmerge0.0900.486
Number of reflections78602
<I/σ(I)>2.82.8
Completeness [%]1.00.895
Redundancy3.83.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 M KSCN, 20% (W/V) PEG3350

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon