5F1M
Crystal structure of Serine/threonine phosphatase Stp1 from Staphylococcus aureus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | RIGAKU MICROMAX-002+ |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-31 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 38.770, 77.350, 85.360 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.114 - 2.322 |
R-factor | 0.2049 |
Rwork | 0.202 |
R-free | 0.25550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2pk0 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.572 |
Data reduction software | iMOSFLM |
Data scaling software | iMOSFLM |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.770 | 38.770 | 2.400 |
High resolution limit [Å] | 2.320 | 8.990 | 2.320 |
Rmerge | 0.177 | 0.044 | 1.079 |
Rmeas | 0.192 | 0.048 | 1.198 |
Rpim | 0.072 | 0.018 | 0.510 |
Total number of observations | 80708 | 1494 | 6028 |
Number of reflections | 11662 | ||
<I/σ(I)> | 8.2 | 21.4 | 1.3 |
Completeness [%] | 100.0 | 98.1 | 99.9 |
Redundancy | 6.9 | 6.1 | 5.3 |
CC(1/2) | 0.994 | 0.999 | 0.625 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 15%PEG4000, 200mM MgCl2, 100mM Tris, 0.5mM MnCl2 |