5EWO
Crystal structure of the human astrovirus 1 capsid protein spike domain at 0.95-A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-02-13 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.033 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 103.230, 103.230, 41.670 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 16.122 - 0.950 |
R-factor | 0.1319 |
Rwork | 0.131 |
R-free | 0.14250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qsq |
Data reduction software | MOSFLM (3.3.21) |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 16.210 | 16.210 | 1.000 |
High resolution limit [Å] | 0.950 | 3.000 | 0.950 |
Rmerge | 0.073 | 0.051 | 0.455 |
Rmeas | 0.079 | ||
Rpim | 0.030 | 0.022 | 0.022 |
Total number of observations | 756406 | 22751 | 60237 |
Number of reflections | 141071 | ||
<I/σ(I)> | 13.7 | 27.1 | 3.1 |
Completeness [%] | 90.5 | 76.2 | 67.4 |
Redundancy | 6 | 6.2 | 4.5 |
CC(1/2) | 0.998 | 0.996 | 0.842 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 295 | PEG 400, Ammonium sulfate , MES |