5ETW
Crystal structure of the indoleamine 2,3-dioxygenagse 1 (IDO1) complexed with NLG919 analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-12-06 |
Detector | MAR scanner 300 mm plate |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.674, 91.432, 128.373 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.740 - 2.700 |
R-factor | 0.19 |
Rwork | 0.189 |
R-free | 0.21590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2d0t |
RMSD bond length | 0.007 |
RMSD bond angle | 0.687 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX (1.10_2152) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.800 |
High resolution limit [Å] | 2.700 | 5.800 | 2.700 |
Rmerge | 0.066 | 0.033 | 0.609 |
Rmeas | 0.072 | 0.036 | 0.665 |
Rpim | 0.029 | 0.015 | 0.263 |
Total number of observations | 165990 | ||
Number of reflections | 27758 | ||
<I/σ(I)> | 14.3 | ||
Completeness [%] | 97.6 | 92.7 | 99.2 |
Redundancy | 6 | 5.4 | 6.2 |
CC(1/2) | 0.999 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | PEG, Ammonium Fluoride |