5EQF
Crystal structure of oxidized UDP-galactopyranose mutase from Corynebacterium diphtheriae with UDP bound in closed form
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-G |
| Synchrotron site | APS |
| Beamline | 21-ID-G |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2014-06-22 |
| Detector | MARMOSAIC 300 mm CCD |
| Wavelength(s) | 0.97856 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 115.565, 82.691, 108.567 |
| Unit cell angles | 90.00, 112.64, 90.00 |
Refinement procedure
| Resolution | 28.250 - 2.145 |
| R-factor | 0.179 |
| Rwork | 0.176 |
| R-free | 0.22810 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5eqd |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.192 |
| Data reduction software | HKL-2000 |
| Data scaling software | SCALEPACK |
| Phasing software | PHASER (2.5.6) |
| Refinement software | PHENIX ((phenix.refine: 1.9_1690)) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 30.400 | 30.400 | 2.230 |
| High resolution limit [Å] | 2.145 | 4.630 | 2.145 |
| Rmerge | 0.064 | 0.040 | 0.419 |
| Rmeas | 0.069 | 0.043 | 0.458 |
| Rpim | 0.025 | 0.016 | 0.181 |
| Total number of observations | 376968 | ||
| Number of reflections | 50316 | ||
| <I/σ(I)> | 10.6 | ||
| Completeness [%] | 97.5 | 99.2 | 90.5 |
| Redundancy | 7.5 | 7.4 | 5.8 |
| CC(1/2) | 0.999 | 0.956 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 298 | 100 mM Bis-Tris, 200 mM lithium sulfate, 21% PEG 3350 |
