5EL2
Crystal structure of Odorant Binding Protein 1 from Anopheles gambiae (AgamOBP1) with Icaridin (butan-2-yl 2-(2-hydroxyethyl)piperidine-1-carboxylate)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-02-23 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 29.984, 68.476, 61.675 |
Unit cell angles | 90.00, 99.61, 90.00 |
Refinement procedure
Resolution | 60.810 - 1.750 |
R-factor | 0.1796 |
Rwork | 0.177 |
R-free | 0.22090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2erb |
RMSD bond length | 0.008 |
RMSD bond angle | 1.395 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.810 | 28.526 | 1.840 |
High resolution limit [Å] | 1.750 | 5.530 | 1.750 |
Rmerge | 0.022 | 0.381 | |
Rmeas | 0.062 | ||
Rpim | 0.030 | 0.013 | 0.224 |
Total number of observations | 100635 | 3260 | 13348 |
Number of reflections | 24664 | ||
<I/σ(I)> | 17.6 | 43.8 | 3.5 |
Completeness [%] | 99.3 | 99.4 | 98.6 |
Redundancy | 4.1 | 4 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 32% PEG 8000, 250 mM MgCl2, 50 mM Tris-HCl |