5EK4
Crystal structure of the indoleamine 2,3-dioxygenagse 1 (IDO1) complexed with NLG919 analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-06 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.768, 92.357, 129.928 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.938 - 2.640 |
R-factor | 0.1851 |
Rwork | 0.183 |
R-free | 0.22440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2d0t |
RMSD bond length | 0.008 |
RMSD bond angle | 0.987 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP (11.2.05) |
Refinement software | PHENIX ((1.10_2152)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.730 |
High resolution limit [Å] | 2.640 | 5.680 | 2.640 |
Rmerge | 0.071 | 0.038 | 0.448 |
Total number of observations | 164703 | ||
Number of reflections | 30572 | ||
<I/σ(I)> | 17.9 | ||
Completeness [%] | 98.7 | 96.6 | 99.5 |
Redundancy | 5.4 | 5.1 | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | PEG, Ammonium Fluoride |