5EK3
Crystal structure of the indoleamine 2,3-dioxygenagse 1 (IDO1) complexed with NLG919 analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-07-14 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.745, 92.256, 129.638 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.822 - 2.209 |
R-factor | 0.1864 |
Rwork | 0.184 |
R-free | 0.23190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2d0t |
RMSD bond length | 0.004 |
RMSD bond angle | 0.724 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.10_2152)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.280 |
High resolution limit [Å] | 2.200 | 4.730 | 2.200 |
Rmerge | 0.054 | 0.033 | 0.551 |
Rmeas | 0.061 | 0.037 | 0.629 |
Rpim | 0.028 | 0.016 | 0.300 |
Total number of observations | 223304 | ||
Number of reflections | 50213 | ||
<I/σ(I)> | 14.2 | ||
Completeness [%] | 96.4 | 93.9 | 95.2 |
Redundancy | 4.4 | 4.5 | 4.4 |
CC(1/2) | 0.998 | 0.844 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | PEG, Ammonium Fluoride |