5EGG
Crystal structure of human ubiquitin-conjugating enzyme UBCH5C
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-07-09 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97852 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 28.170, 66.280, 76.740 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.420 - 1.760 |
R-factor | 0.2082 |
Rwork | 0.206 |
R-free | 0.25280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1x23 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.316 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | AUTOMAR |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.420 | 1.860 |
High resolution limit [Å] | 1.760 | 1.760 |
Number of reflections | 14797 | |
<I/σ(I)> | 5.5 | |
Completeness [%] | 99.5 | |
Redundancy | 13.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 2% v/v Tacsimate pH 4.0, 0.1 M Sodium acetate trihydrate pH 4.6, 16% w/v Polyethylene glycol 3350 |